Transcriptomics Data Analysis: Precision Oncology

Mohit Mazumder, Ph.D.
3 min readApr 21, 2021

Hands-on workshop on User-friendly Big Data Analysis tools curated NGS transcriptomics datasets and methods of biological interpretation for molecular signatures associated with Lymphoma clinical pathology

Precision medicine is changing the way we understand, diagnose and treat cancer. This transformation is driven by high-throughput molecular data from patients, animal models, and large-scale experiments. One such repository that has gained prominence for cancer researchers around the world is “The Cancer Genome Atlas (TCGA)”. In this multi-center collection of patient samples, one can find multi-omics data and clinical met-data from thousands of patients across many clinical pathologies.

This workshop will introduce clinicians and researchers to this invaluable resource and big data analysis tools that can help them gain insights into lymphoma. The workshop is organized by experts in bioinformatics and computational biology from Pine Biotech and Dr. Saumya Ranjan Mallick, Associate Professor, Department of Pathology, All India Institute of Medical Sciences (AIIMS) under the guidance of Chairperson, Prof Manoj Kumar Singh, Head of Pathology, AIIMS, N. Delhi.

Schedule for Day 1

Pre-registration form: https://edu.tbioinfo.com/aiims-tcga-workshop

Schedule for Day 2

Our focus will be to use analytical methods and reference databases to study RNA-seq data to understand how gene expression variation across many conditions. Learn more by reviewing the free overview video/ webinar recording.

About Us

All India Institute of Medical Sciences — New Delhi (AIIMS New Delhi) is a public hospital and medical research university based in New Delhi, India. AIIMS (New Delhi) was ranked 1 in South Asia in 2020 in Life Sciences and Medicine by QS WUR and featured in the World’s Best Hospitals 2020 Top 100 at the 52nd place by Newsweek. Amongst National ranking AIIMS (New Delhi) was ranked 1 among all medical colleges in India by the National Institutional Ranking Framework in 2020, India Today, and Outlook India in 2020.

Omicslogic Research for Students & Researchers: https://server.t-bio.info/

Pine Biotech, Inc. is a US-based company that provides resources, solutions, and training for research and education in biomedical informatics. This workshop will utilize OmicsLogic (learn.omicslogic.com) Bioinformatics Resources. Omics Logic is an integrated educational and research platform, where students and faculty can learn, conduct research and collaborate. The platform combines introductory coursework on biological data analysis with data management and analytical tools.

Learn RNA-Seq Data Processing, Analysis, and Interpretation, Leverage User-friendly Cloud-based Tools for Analysis, Train Machine Learning Models on Large Biomedical Datasets, Discuss your Research Project with an Expert, Obtain a Certificate of Participation from AIIMS & Pine Biotech, Apply for Omicslogic Research Fellowship and be an NGS mentor

Pre-registration form: https://edu.tbioinfo.com/aiims-tcga-workshop

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Mohit Mazumder, Ph.D.

Ph.D. in Computational Biology | Bioinformatics Project experience ~12 years over 80 projects & Online Tutor | Director of Global Business Development Pine Bio